scaffold4594 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold4594 |
1 |
745 |
+ |
RS123 |
Unspecified |
| scaffold4594 |
755 |
787 |
+ |
(TAT)n |
Simple_repeat |
| scaffold4594 |
1124 |
1700 |
+ |
RS220 |
Unspecified |
| scaffold4594 |
4582 |
4654 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold4594 |
4833 |
5119 |
+ |
PL678 |
Unspecified |
| scaffold4594 |
5119 |
5329 |
- |
RS3019 |
Unspecified |
| scaffold4594 |
5363 |
5394 |
+ |
(TTGTG)n |
Simple_repeat |
| scaffold4594 |
7087 |
7138 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
9418 |
9517 |
+ |
RS13263 |
Unspecified |
| scaffold4594 |
9601 |
10140 |
+ |
RS2138 |
Unspecified |
| scaffold4594 |
10149 |
10454 |
- |
EnSpm-2_GM |
DNA/CMC-EnSpm |
| scaffold4594 |
10863 |
10962 |
+ |
RS13263 |
Unspecified |
| scaffold4594 |
11046 |
11585 |
+ |
RS2138 |
Unspecified |
| scaffold4594 |
11594 |
12324 |
- |
EnSpm-1_GM |
DNA/CMC-EnSpm |
| scaffold4594 |
18664 |
18873 |
+ |
PL522 |
Unspecified |
| scaffold4594 |
19301 |
19371 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold4594 |
20299 |
20340 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
21442 |
21477 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold4594 |
21489 |
22064 |
- |
PL268 |
Unspecified |
| scaffold4594 |
22061 |
22419 |
+ |
RS325 |
Unspecified |
| scaffold4594 |
22106 |
22690 |
+ |
RS8550 |
Unspecified |
| scaffold4594 |
23151 |
23305 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold4594 |
23268 |
23305 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold4594 |
23477 |
23503 |
+ |
(TTGAT)n |
Simple_repeat |
| scaffold4594 |
23856 |
23905 |
+ |
(AAGTG)n |
Simple_repeat |
| scaffold4594 |
24146 |
24334 |
- |
RS1182 |
Unspecified |
| scaffold4594 |
24338 |
24715 |
+ |
RS8550 |
Unspecified |
| scaffold4594 |
25170 |
25291 |
- |
RS1181 |
Unspecified |
| scaffold4594 |
25301 |
25335 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
29837 |
29930 |
+ |
RS4475 |
Unspecified |
| scaffold4594 |
30022 |
30068 |
+ |
(AATCTAT)n |
Simple_repeat |
| scaffold4594 |
30823 |
30884 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4594 |
30901 |
31166 |
- |
RS10 |
Unspecified |
| scaffold4594 |
31164 |
31270 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold4594 |
32065 |
32103 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
32208 |
33765 |
- |
Copia-5_Pru-I |
LTR/Copia |
| scaffold4594 |
34028 |
34061 |
+ |
GA-rich |
Low_complexity |
| scaffold4594 |
34253 |
35037 |
- |
Copia-5_Pru-I |
LTR/Copia |
| scaffold4594 |
34594 |
35366 |
+ |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold4594 |
35495 |
35536 |
- |
Copia-5_Pru-I |
LTR/Copia |
| scaffold4594 |
35940 |
35982 |
- |
Copia-5_Pru-I |
LTR/Copia |
| scaffold4594 |
36745 |
36791 |
- |
Copia-5_Pru-I |
LTR/Copia |
| scaffold4594 |
37058 |
37125 |
+ |
(CGAAGAA)n |
Simple_repeat |
| scaffold4594 |
37227 |
37265 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
37566 |
37595 |
+ |
(T)n |
Simple_repeat |
| scaffold4594 |
39864 |
39892 |
+ |
(AATA)n |
Simple_repeat |
| scaffold4594 |
39935 |
40001 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold4594 |
40213 |
40595 |
- |
RS187 |
Unspecified |
| scaffold4594 |
43457 |
43602 |
- |
PL8 |
Unspecified |
| scaffold4594 |
43609 |
43634 |
+ |
(A)n |
Simple_repeat |
| scaffold4594 |
43912 |
44191 |
+ |
RS1303 |
Unspecified |
| scaffold4594 |
44204 |
44342 |
- |
RS603 |
Unspecified |
| scaffold4594 |
44399 |
44922 |
+ |
Copia-2_SL-I |
LTR/Copia |
| scaffold4594 |
45390 |
46063 |
- |
PL144 |
Unspecified |
| scaffold4594 |
47041 |
48375 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold4594 |
48392 |
48691 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold4594 |
48411 |
48613 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold4594 |
48808 |
48971 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold4594 |
49966 |
50035 |
+ |
(AATCAAT)n |
Simple_repeat |
| scaffold4594 |
50658 |
50954 |
- |
RS827 |
Unspecified |
| scaffold4594 |
51137 |
51865 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold4594 |
51865 |
51989 |
- |
RS195 |
Unspecified |
| scaffold4594 |
52007 |
52056 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold4594 |
52500 |
52552 |
+ |
(TACAA)n |
Simple_repeat |
| scaffold4594 |
52881 |
52989 |
+ |
PL913 |
Unspecified |
| scaffold4594 |
52993 |
53039 |
+ |
PL160 |
Unspecified |
| scaffold4594 |
53611 |
53633 |
+ |
(A)n |
Simple_repeat |
| scaffold4594 |
54834 |
54874 |
- |
LINE1-49_SBi |
LINE/L1 |
| scaffold4594 |
54898 |
56967 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold4594 |
55156 |
55946 |
- |
L1-1_GM |
LINE/L1 |
| scaffold4594 |
58707 |
58833 |
+ |
(AATATTA)n |
Simple_repeat |
| scaffold4594 |
59209 |
59320 |
- |
RS76 |
Unspecified |
| scaffold4594 |
60411 |
60442 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
60443 |
60945 |
+ |
RS10815 |
Unspecified |
| scaffold4594 |
61015 |
61073 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold4594 |
61391 |
61422 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
61423 |
62005 |
+ |
RS10815 |
Unspecified |
| scaffold4594 |
62831 |
62884 |
+ |
(ATAATAC)n |
Simple_repeat |
| scaffold4594 |
63052 |
63081 |
+ |
(A)n |
Simple_repeat |
| scaffold4594 |
63484 |
63544 |
+ |
(ACACAA)n |
Simple_repeat |
| scaffold4594 |
63736 |
63806 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
64665 |
64881 |
+ |
(CCCCAG)n |
Simple_repeat |
| scaffold4594 |
64799 |
64920 |
+ |
L1-2_VC |
LINE/L1 |
| scaffold4594 |
66129 |
66185 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
67645 |
68152 |
+ |
RS247 |
Unspecified |
| scaffold4594 |
67834 |
68162 |
+ |
RS2911 |
Unspecified |
| scaffold4594 |
68823 |
68865 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
69257 |
70305 |
- |
RS1447 |
Unspecified |
| scaffold4594 |
71356 |
71648 |
- |
RS1857 |
Unspecified |
| scaffold4594 |
71950 |
71994 |
+ |
A-rich |
Low_complexity |
| scaffold4594 |
72281 |
72333 |
+ |
(AATTCTC)n |
Simple_repeat |
| scaffold4594 |
72403 |
72994 |
+ |
RS490 |
Unspecified |
| scaffold4594 |
74013 |
74744 |
+ |
(T)n |
Simple_repeat |
| scaffold4594 |
74711 |
74744 |
+ |
(T)n |
Simple_repeat |
| scaffold4594 |
74840 |
74896 |
- |
POPGY1_I-int |
LTR/Gypsy |
| scaffold4594 |
75056 |
75166 |
+ |
RS5961 |
Unspecified |
| scaffold4594 |
75986 |
76020 |
+ |
(T)n |
Simple_repeat |
| scaffold4594 |
76049 |
76082 |
- |
Athila8A_I-int |
LTR/Gypsy |
| scaffold4594 |
76083 |
76127 |
- |
Alfare1_I-int |
LTR/Copia? |