scaffold5448 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5448 |
1 |
803 |
+ |
RS15 |
Unspecified |
| scaffold5448 |
1463 |
1587 |
+ |
SZ-25_LTR |
LTR/Copia |
| scaffold5448 |
1696 |
1778 |
- |
PL834 |
Unspecified |
| scaffold5448 |
1894 |
1935 |
+ |
(TATGT)n |
Simple_repeat |
| scaffold5448 |
2302 |
3454 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold5448 |
3635 |
3985 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold5448 |
4046 |
4105 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold5448 |
4130 |
5357 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold5448 |
5573 |
7222 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold5448 |
7795 |
7928 |
- |
Copia-62_GM-LTR |
LTR/Copia |
| scaffold5448 |
8703 |
8849 |
- |
Copia-62_GM-LTR |
LTR/Copia |
| scaffold5448 |
9363 |
10669 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold5448 |
10715 |
11065 |
+ |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold5448 |
11252 |
12399 |
+ |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold5448 |
12505 |
12786 |
- |
RS765 |
Unspecified |
| scaffold5448 |
13053 |
13084 |
+ |
(CACCAG)n |
Simple_repeat |
| scaffold5448 |
14087 |
14135 |
+ |
(GTACCA)n |
Simple_repeat |
| scaffold5448 |
14304 |
14400 |
- |
COPI2_I-int |
LTR/Copia |
| scaffold5448 |
15259 |
15308 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
16087 |
16212 |
+ |
COPI2_LTR |
LTR/Copia |
| scaffold5448 |
16680 |
16876 |
+ |
RS4741 |
Unspecified |
| scaffold5448 |
17548 |
17576 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5448 |
17711 |
17916 |
+ |
RS15819 |
Unspecified |
| scaffold5448 |
17746 |
18036 |
+ |
RS1746 |
Unspecified |
| scaffold5448 |
17817 |
18107 |
- |
RS1746 |
Unspecified |
| scaffold5448 |
18769 |
18816 |
+ |
(T)n |
Simple_repeat |
| scaffold5448 |
19423 |
19468 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
19695 |
19915 |
+ |
RS8435 |
Unspecified |
| scaffold5448 |
20056 |
20094 |
+ |
(T)n |
Simple_repeat |
| scaffold5448 |
20103 |
20194 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold5448 |
20282 |
20352 |
+ |
(TATGGA)n |
Simple_repeat |
| scaffold5448 |
20634 |
20660 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold5448 |
21504 |
22059 |
- |
RS1901 |
Unspecified |
| scaffold5448 |
22141 |
22321 |
+ |
Gypsy-13_Mad-I |
LTR/Gypsy |
| scaffold5448 |
22566 |
22669 |
+ |
L1-15_GM |
LINE/L1 |
| scaffold5448 |
23466 |
23585 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold5448 |
24513 |
24568 |
+ |
L1-4_STu |
LINE/L1 |
| scaffold5448 |
24780 |
25579 |
+ |
L1-1_GM |
LINE/L1 |
| scaffold5448 |
25700 |
25978 |
+ |
L1-15_GM |
LINE/L1 |
| scaffold5448 |
27287 |
27318 |
+ |
GA-rich |
Low_complexity |
| scaffold5448 |
27354 |
27986 |
+ |
Gypsy-36_Mad-I |
LTR/Gypsy |
| scaffold5448 |
28131 |
28395 |
+ |
Gypsy-36_Mad-I |
LTR/Gypsy |
| scaffold5448 |
28975 |
29051 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
28975 |
29121 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
29016 |
29162 |
+ |
Gypsy-36_Mad-I |
LTR/Gypsy |
| scaffold5448 |
29106 |
29162 |
+ |
Gypsy-36_Mad-I |
LTR/Gypsy |
| scaffold5448 |
29461 |
29489 |
+ |
(A)n |
Simple_repeat |
| scaffold5448 |
29490 |
29628 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold5448 |
31218 |
31352 |
- |
RS8341 |
Unspecified |
| scaffold5448 |
31450 |
31595 |
- |
RS11182 |
Unspecified |
| scaffold5448 |
32087 |
32642 |
- |
RS1901 |
Unspecified |
| scaffold5448 |
32543 |
32856 |
+ |
RS859 |
Unspecified |
| scaffold5448 |
33185 |
33324 |
- |
L1-14_GM |
LINE/L1 |
| scaffold5448 |
33460 |
34158 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold5448 |
33462 |
33591 |
- |
BVBNR1 |
LINE/L1 |
| scaffold5448 |
33839 |
33895 |
- |
SHALINE12_MT |
LINE/L1 |
| scaffold5448 |
34777 |
34836 |
+ |
(CCGCC)n |
Simple_repeat |
| scaffold5448 |
34910 |
34949 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold5448 |
35153 |
35198 |
+ |
G-rich |
Low_complexity |
| scaffold5448 |
35243 |
35293 |
+ |
(CCA)n |
Simple_repeat |
| scaffold5448 |
35301 |
35497 |
+ |
PL672 |
Unspecified |
| scaffold5448 |
35498 |
35623 |
+ |
PL538 |
Unspecified |
| scaffold5448 |
35724 |
35763 |
- |
EnSpm-16_SBi |
DNA/CMC-EnSpm |
| scaffold5448 |
35794 |
35887 |
- |
EnSpm-9_STu |
DNA/CMC-EnSpm |
| scaffold5448 |
36160 |
36330 |
+ |
RS6841 |
Unspecified |
| scaffold5448 |
36368 |
36444 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold5448 |
36503 |
36697 |
+ |
RS6841 |
Unspecified |
| scaffold5448 |
36669 |
36759 |
+ |
RS6841 |
Unspecified |
| scaffold5448 |
36886 |
36933 |
+ |
(CAT)n |
Simple_repeat |
| scaffold5448 |
37445 |
37564 |
- |
RS840 |
Unspecified |
| scaffold5448 |
37445 |
37587 |
- |
RS7336 |
Unspecified |
| scaffold5448 |
37485 |
37638 |
- |
RS11905 |
Unspecified |
| scaffold5448 |
37507 |
37619 |
+ |
RS14697 |
Unspecified |
| scaffold5448 |
38128 |
38333 |
- |
RS7053 |
Unspecified |
| scaffold5448 |
38450 |
38578 |
- |
RS7053 |
Unspecified |
| scaffold5448 |
39747 |
39982 |
+ |
RS6057 |
Unspecified |
| scaffold5448 |
39997 |
40484 |
+ |
RS7845 |
Unspecified |
| scaffold5448 |
40495 |
40846 |
+ |
RS4782 |
Unspecified |
| scaffold5448 |
40833 |
42109 |
- |
RS1449 |
Unspecified |
| scaffold5448 |
41768 |
43114 |
+ |
RS412 |
Unspecified |
| scaffold5448 |
43115 |
43363 |
+ |
PL683 |
Unspecified |
| scaffold5448 |
43836 |
43861 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold5448 |
44028 |
44108 |
- |
RS2491 |
Unspecified |
| scaffold5448 |
44192 |
44251 |
- |
RS2491 |
Unspecified |
| scaffold5448 |
44250 |
44486 |
+ |
RS114 |
Unspecified |
| scaffold5448 |
44548 |
45093 |
- |
RS2491 |
Unspecified |
| scaffold5448 |
45384 |
45765 |
- |
RS4035 |
Unspecified |
| scaffold5448 |
47522 |
47724 |
+ |
RS160 |
Unspecified |
| scaffold5448 |
48750 |
48887 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
49129 |
49600 |
+ |
PL570 |
Unspecified |
| scaffold5448 |
50104 |
50212 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5448 |
50237 |
50284 |
+ |
(CTT)n |
Simple_repeat |
| scaffold5448 |
50299 |
50384 |
+ |
(AAC)n |
Simple_repeat |
| scaffold5448 |
51005 |
51120 |
- |
RS2963 |
Unspecified |
| scaffold5448 |
51116 |
51259 |
- |
RS1753 |
Unspecified |
| scaffold5448 |
51136 |
51900 |
- |
PL344 |
Unspecified |
| scaffold5448 |
52006 |
52219 |
+ |
PL874 |
Unspecified |
| scaffold5448 |
52306 |
52332 |
+ |
(AT)n |
Simple_repeat |
| scaffold5448 |
52418 |
52728 |
+ |
RS1919 |
Unspecified |
| scaffold5448 |
53553 |
53595 |
+ |
(TGTTTTA)n |
Simple_repeat |
| scaffold5448 |
54007 |
55241 |
+ |
RS51 |
Unspecified |
| scaffold5448 |
55006 |
55275 |
+ |
PL383 |
Unspecified |
| scaffold5448 |
56548 |
56617 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
56801 |
58607 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5448 |
58938 |
59976 |
+ |
Gypsy-23_VV-I |
LTR/Gypsy |
| scaffold5448 |
60105 |
60166 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold5448 |
60406 |
60429 |
+ |
(A)n |
Simple_repeat |
| scaffold5448 |
60927 |
61315 |
- |
RS5609 |
Unspecified |
| scaffold5448 |
61164 |
61594 |
+ |
RS1001 |
Unspecified |
| scaffold5448 |
61917 |
62534 |
+ |
RS244 |
Unspecified |
| scaffold5448 |
62505 |
62868 |
+ |
RS878 |
Unspecified |
| scaffold5448 |
62920 |
63037 |
+ |
L1-4_VC |
LINE/L1 |
| scaffold5448 |
64007 |
64949 |
- |
PL538 |
Unspecified |
| scaffold5448 |
64973 |
65009 |
+ |
(T)n |
Simple_repeat |
| scaffold5448 |
65095 |
65124 |
+ |
(TTTTCA)n |
Simple_repeat |
| scaffold5448 |
65856 |
65922 |
+ |
PL918 |
Unspecified |
| scaffold5448 |
65923 |
66054 |
+ |
RS25 |
Unspecified |
| scaffold5448 |
66101 |
66142 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5448 |
66361 |
66378 |
+ |
(AT)n |
Simple_repeat |
| scaffold5448 |
66868 |
66902 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
67347 |
67625 |
+ |
RS8598 |
Unspecified |
| scaffold5448 |
67846 |
67942 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
68087 |
68636 |
- |
RS12449 |
Unspecified |
| scaffold5448 |
68884 |
68939 |
+ |
(A)n |
Simple_repeat |
| scaffold5448 |
68962 |
69103 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5448 |
69180 |
69220 |
+ |
(A)n |
Simple_repeat |
| scaffold5448 |
70150 |
70217 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold5448 |
70543 |
70594 |
+ |
(TA)n |
Simple_repeat |
| scaffold5448 |
71125 |
71365 |
- |
RS2042 |
Unspecified |
| scaffold5448 |
71183 |
71588 |
- |
RS3309 |
Unspecified |
| scaffold5448 |
72368 |
72438 |
+ |
(CCG)n |
Simple_repeat |
| scaffold5448 |
72411 |
72448 |
+ |
(CCACCGA)n |
Simple_repeat |
| scaffold5448 |
72708 |
73152 |
- |
RS12449 |
Unspecified |
| scaffold5448 |
73175 |
73352 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5448 |
73497 |
73664 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5448 |
73926 |
74064 |
+ |
PL375 |
Unspecified |
| scaffold5448 |
74124 |
74226 |
- |
hAT-4_EPa |
DNA/hAT-Ac |
| scaffold5448 |
74225 |
74400 |
+ |
RS1787 |
Unspecified |
| scaffold5448 |
74279 |
74448 |
+ |
RS4054 |
Unspecified |
| scaffold5448 |
74561 |
74800 |
+ |
GA-rich |
Low_complexity |
| scaffold5448 |
74952 |
75026 |
+ |
(TG)n |
Simple_repeat |
| scaffold5448 |
75046 |
75069 |
+ |
(T)n |
Simple_repeat |
| scaffold5448 |
75206 |
75283 |
+ |
(ACCCACC)n |
Simple_repeat |
| scaffold5448 |
75284 |
75292 |
+ |
(ACC)n |
Simple_repeat |
| scaffold5448 |
75312 |
75346 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5448 |
75374 |
75487 |
+ |
(ACC)n |
Simple_repeat |
| scaffold5448 |
75506 |
75535 |
+ |
(A)n |
Simple_repeat |
| scaffold5448 |
75547 |
75635 |
+ |
(ACC)n |
Simple_repeat |
| scaffold5448 |
75660 |
75730 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
75881 |
75955 |
+ |
(TG)n |
Simple_repeat |
| scaffold5448 |
76132 |
76209 |
+ |
(ACCCACC)n |
Simple_repeat |
| scaffold5448 |
76210 |
76218 |
+ |
(ACC)n |
Simple_repeat |
| scaffold5448 |
76238 |
76272 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5448 |
76299 |
76412 |
+ |
(ACC)n |
Simple_repeat |
| scaffold5448 |
76431 |
76460 |
+ |
(A)n |
Simple_repeat |
| scaffold5448 |
76472 |
76560 |
+ |
(ACC)n |
Simple_repeat |
| scaffold5448 |
76572 |
76682 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
77011 |
77049 |
+ |
(AT)n |
Simple_repeat |
| scaffold5448 |
77141 |
77179 |
+ |
(AT)n |
Simple_repeat |
| scaffold5448 |
77297 |
77345 |
+ |
A-rich |
Low_complexity |
| scaffold5448 |
77564 |
77611 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold5448 |
77757 |
77843 |
+ |
(TTTTCAA)n |
Simple_repeat |
| scaffold5448 |
77812 |
77871 |
+ |
(TTATCT)n |
Simple_repeat |
| scaffold5448 |
78031 |
78242 |
+ |
RS2188 |
Unspecified |
| scaffold5448 |
78308 |
78487 |
- |
RS1474 |
Unspecified |
| scaffold5448 |
78385 |
78521 |
+ |
RS3010 |
Unspecified |
| scaffold5448 |
78525 |
78748 |
+ |
RS3010 |
Unspecified |
| scaffold5448 |
78610 |
78774 |
+ |
RS4572 |
Unspecified |
| scaffold5448 |
78864 |
79329 |
- |
PL590 |
Unspecified |
| scaffold5448 |
79176 |
80047 |
- |
RS1474 |
Unspecified |
| scaffold5448 |
80466 |
80504 |
+ |
GA-rich |
Low_complexity |