scaffold5546 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5546 |
154 |
394 |
+ |
RS17723 |
Unspecified |
| scaffold5546 |
434 |
698 |
+ |
RS4287 |
Unspecified |
| scaffold5546 |
723 |
752 |
- |
RS11127 |
Unspecified |
| scaffold5546 |
770 |
999 |
- |
RS11127 |
Unspecified |
| scaffold5546 |
1263 |
1286 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5546 |
1893 |
2037 |
- |
RS9023 |
Unspecified |
| scaffold5546 |
4870 |
5078 |
- |
RS6509 |
Unspecified |
| scaffold5546 |
5163 |
5361 |
- |
RS29 |
Unspecified |
| scaffold5546 |
5480 |
5506 |
+ |
(GA)n |
Simple_repeat |
| scaffold5546 |
7336 |
7402 |
+ |
RS13434 |
Unspecified |
| scaffold5546 |
7460 |
7692 |
+ |
RS17723 |
Unspecified |
| scaffold5546 |
7902 |
8165 |
+ |
RS4287 |
Unspecified |
| scaffold5546 |
8764 |
8815 |
+ |
(CACCCA)n |
Simple_repeat |
| scaffold5546 |
10302 |
11036 |
- |
PL706 |
Unspecified |
| scaffold5546 |
10509 |
11040 |
- |
RS23 |
Unspecified |
| scaffold5546 |
11036 |
11211 |
+ |
RS13434 |
Unspecified |
| scaffold5546 |
12813 |
13043 |
+ |
RS17723 |
Unspecified |
| scaffold5546 |
13042 |
13128 |
- |
RS5123 |
Unspecified |
| scaffold5546 |
13145 |
13376 |
- |
RS11127 |
Unspecified |
| scaffold5546 |
13469 |
13613 |
- |
RS9023 |
Unspecified |
| scaffold5546 |
15305 |
15340 |
+ |
(A)n |
Simple_repeat |
| scaffold5546 |
15455 |
15754 |
- |
RS10786 |
Unspecified |
| scaffold5546 |
15666 |
15872 |
- |
RS2097 |
Unspecified |
| scaffold5546 |
16089 |
16833 |
+ |
RS5442 |
Unspecified |
| scaffold5546 |
16500 |
16887 |
- |
RS7979 |
Unspecified |
| scaffold5546 |
16862 |
16971 |
- |
RS7979 |
Unspecified |
| scaffold5546 |
17288 |
17874 |
- |
PL359 |
Unspecified |
| scaffold5546 |
18059 |
18084 |
+ |
(A)n |
Simple_repeat |
| scaffold5546 |
18763 |
18798 |
+ |
A-rich |
Low_complexity |
| scaffold5546 |
18763 |
18862 |
+ |
A-rich |
Low_complexity |
| scaffold5546 |
18781 |
18862 |
+ |
RS124 |
Unspecified |
| scaffold5546 |
18860 |
19123 |
+ |
RS356 |
Unspecified |
| scaffold5546 |
19122 |
19400 |
+ |
RS1010 |
Unspecified |
| scaffold5546 |
19707 |
19898 |
+ |
G-rich |
Low_complexity |
| scaffold5546 |
19993 |
20063 |
+ |
(CCCGATACT)n |
Simple_repeat |
| scaffold5546 |
20315 |
20624 |
+ |
RS1746 |
Unspecified |
| scaffold5546 |
20685 |
20779 |
+ |
RS1010 |
Unspecified |
| scaffold5546 |
20779 |
21126 |
+ |
PL654 |
Unspecified |
| scaffold5546 |
20782 |
21075 |
+ |
RS1010 |
Unspecified |
| scaffold5546 |
21636 |
21661 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold5546 |
22070 |
22280 |
- |
RS873 |
Unspecified |
| scaffold5546 |
22284 |
22315 |
+ |
(TTATGT)n |
Simple_repeat |
| scaffold5546 |
22416 |
22624 |
- |
RS6509 |
Unspecified |
| scaffold5546 |
22709 |
22907 |
- |
RS29 |
Unspecified |
| scaffold5546 |
23026 |
23042 |
+ |
(GA)n |
Simple_repeat |
| scaffold5546 |
24634 |
24709 |
+ |
RS13434 |
Unspecified |
| scaffold5546 |
24767 |
24999 |
+ |
RS17723 |
Unspecified |
| scaffold5546 |
25183 |
25243 |
- |
RS11127 |
Unspecified |
| scaffold5546 |
25534 |
25565 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
25745 |
25887 |
- |
RS9023 |
Unspecified |
| scaffold5546 |
26610 |
26636 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
26763 |
26808 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
27717 |
27743 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold5546 |
27825 |
28079 |
+ |
RS72 |
Unspecified |
| scaffold5546 |
28148 |
28174 |
+ |
A-rich |
Low_complexity |
| scaffold5546 |
28204 |
28223 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
28282 |
28310 |
+ |
A-rich |
Low_complexity |
| scaffold5546 |
28524 |
28567 |
+ |
(TTTTAGG)n |
Simple_repeat |
| scaffold5546 |
28880 |
29254 |
+ |
(AATATTT)n |
Simple_repeat |
| scaffold5546 |
29203 |
29254 |
+ |
(AATATTT)n |
Simple_repeat |
| scaffold5546 |
29339 |
29357 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
29431 |
29731 |
+ |
RS72 |
Unspecified |
| scaffold5546 |
29809 |
29901 |
+ |
A-rich |
Low_complexity |
| scaffold5546 |
29952 |
30171 |
- |
RS2097 |
Unspecified |
| scaffold5546 |
30388 |
30685 |
+ |
RS5442 |
Unspecified |
| scaffold5546 |
30682 |
30715 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
30682 |
30953 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
30699 |
30953 |
+ |
RS1524 |
Unspecified |
| scaffold5546 |
32180 |
32212 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
32255 |
32686 |
- |
RS1311 |
Unspecified |
| scaffold5546 |
32382 |
32770 |
- |
RS7979 |
Unspecified |
| scaffold5546 |
32617 |
32842 |
- |
RS1819 |
Unspecified |
| scaffold5546 |
32794 |
33013 |
- |
PL474 |
Unspecified |
| scaffold5546 |
34727 |
34772 |
+ |
(AAGTCAA)n |
Simple_repeat |
| scaffold5546 |
35034 |
35342 |
+ |
RS6882 |
Unspecified |
| scaffold5546 |
35566 |
35604 |
+ |
A-rich |
Low_complexity |
| scaffold5546 |
36107 |
36593 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5546 |
36593 |
36794 |
- |
RS6781 |
Unspecified |
| scaffold5546 |
36827 |
37359 |
- |
RS4884 |
Unspecified |
| scaffold5546 |
39207 |
39309 |
+ |
(AACTAA)n |
Simple_repeat |
| scaffold5546 |
39390 |
39425 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold5546 |
40149 |
40189 |
- |
RS5691 |
Unspecified |
| scaffold5546 |
42128 |
42369 |
+ |
RS4 |
Unspecified |
| scaffold5546 |
42939 |
42998 |
- |
RS1746 |
Unspecified |
| scaffold5546 |
43705 |
47150 |
+ |
Copia-60_VV-I |
LTR/Copia |
| scaffold5546 |
47140 |
47448 |
+ |
RS1010 |
Unspecified |
| scaffold5546 |
47581 |
47797 |
- |
RS873 |
Unspecified |
| scaffold5546 |
47884 |
47902 |
+ |
(GA)n |
Simple_repeat |
| scaffold5546 |
49500 |
49675 |
+ |
RS13434 |
Unspecified |
| scaffold5546 |
51078 |
51099 |
+ |
(A)n |
Simple_repeat |
| scaffold5546 |
53594 |
53612 |
+ |
(A)n |
Simple_repeat |
| scaffold5546 |
55659 |
55763 |
+ |
(CAG)n |
Simple_repeat |
| scaffold5546 |
55893 |
55966 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold5546 |
56144 |
56184 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5546 |
56187 |
56575 |
- |
RS12612 |
Unspecified |
| scaffold5546 |
56652 |
57713 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold5546 |
58862 |
59067 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5546 |
58977 |
59067 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5546 |
58977 |
59616 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5546 |
59054 |
59616 |
+ |
PL782 |
Unspecified |
| scaffold5546 |
60733 |
60853 |
+ |
PL517 |
Unspecified |
| scaffold5546 |
62197 |
62351 |
- |
PL840 |
Unspecified |
| scaffold5546 |
62447 |
62607 |
- |
RS5416 |
Unspecified |
| scaffold5546 |
63150 |
63214 |
+ |
(GATA)n |
Simple_repeat |
| scaffold5546 |
64735 |
64783 |
+ |
(A)n |
Simple_repeat |
| scaffold5546 |
67705 |
67765 |
+ |
RS262 |
Unspecified |
| scaffold5546 |
67794 |
68186 |
- |
RS1279 |
Unspecified |
| scaffold5546 |
68684 |
68817 |
+ |
RS14385 |
Unspecified |
| scaffold5546 |
69643 |
69676 |
+ |
(AAGATG)n |
Simple_repeat |
| scaffold5546 |
71177 |
71217 |
+ |
(ATAATA)n |
Simple_repeat |
| scaffold5546 |
71438 |
71464 |
+ |
A-rich |
Low_complexity |
| scaffold5546 |
71728 |
72110 |
+ |
RS977 |
Unspecified |
| scaffold5546 |
72127 |
73095 |
+ |
RS940 |
Unspecified |
| scaffold5546 |
73128 |
73210 |
+ |
RS1975 |
Unspecified |
| scaffold5546 |
73227 |
73313 |
+ |
RS1975 |
Unspecified |
| scaffold5546 |
73419 |
73501 |
+ |
RS1975 |
Unspecified |
| scaffold5546 |
74095 |
74131 |
+ |
(TATTG)n |
Simple_repeat |
| scaffold5546 |
74164 |
74204 |
+ |
ENSPM2_ZM |
DNA/CMC-EnSpm |
| scaffold5546 |
76669 |
77059 |
+ |
RS994 |
Unspecified |
| scaffold5546 |
77059 |
77362 |
- |
RS257 |
Unspecified |
| scaffold5546 |
78148 |
78191 |
+ |
A-rich |
Low_complexity |
| scaffold5546 |
78747 |
79176 |
- |
PL800 |
Unspecified |
| scaffold5546 |
79179 |
79259 |
- |
PL841 |
Unspecified |
| scaffold5546 |
79252 |
79447 |
- |
PL841 |
Unspecified |
| scaffold5546 |
79839 |
79902 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold5546 |
80127 |
80157 |
+ |
(AATAC)n |
Simple_repeat |
| scaffold5546 |
80192 |
80559 |
+ |
RS1396 |
Unspecified |
| scaffold5546 |
80253 |
80518 |
- |
RS7709 |
Unspecified |
| scaffold5546 |
80726 |
80974 |
+ |
RS69 |
Unspecified |
| scaffold5546 |
80748 |
81026 |
+ |
RS4686 |
Unspecified |
| scaffold5546 |
81101 |
81153 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5546 |
81582 |
81651 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5546 |
85369 |
86075 |
- |
RS2 |
Unspecified |
| scaffold5546 |
86553 |
86570 |
+ |
(T)n |
Simple_repeat |
| scaffold5546 |
87487 |
87603 |
+ |
RS972 |
Unspecified |
| scaffold5546 |
90564 |
90695 |
- |
PL436 |
Unspecified |
| scaffold5546 |
90581 |
90864 |
+ |
RS16147 |
Unspecified |
| scaffold5546 |
90872 |
91017 |
+ |
PL743 |
Unspecified |
| scaffold5546 |
90994 |
91033 |
- |
PL903 |
Unspecified |
| scaffold5546 |
91183 |
91778 |
+ |
RS701 |
Unspecified |
| scaffold5546 |
91677 |
92987 |
- |
RS969 |
Unspecified |
| scaffold5546 |
92877 |
93745 |
- |
RS684 |
Unspecified |
| scaffold5546 |
93743 |
94788 |
- |
RS684 |
Unspecified |
| scaffold5546 |
94794 |
95379 |
- |
RS1282 |
Unspecified |
| scaffold5546 |
95615 |
95878 |
+ |
Gypsy-47_Mad-I |
LTR/Gypsy |