scaffold5548 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5548 |
96 |
164 |
- |
RS2038 |
Unspecified |
| scaffold5548 |
161 |
201 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
1911 |
2040 |
- |
LINE1-53_ZM |
LINE/L1 |
| scaffold5548 |
2177 |
2532 |
- |
SHALINE6_MT |
LINE/L1 |
| scaffold5548 |
2535 |
2777 |
- |
RS2038 |
Unspecified |
| scaffold5548 |
3268 |
3365 |
+ |
(CCA)n |
Simple_repeat |
| scaffold5548 |
3553 |
3591 |
+ |
A-rich |
Low_complexity |
| scaffold5548 |
3585 |
3619 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold5548 |
5078 |
5122 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold5548 |
5776 |
5795 |
+ |
(TTC)n |
Simple_repeat |
| scaffold5548 |
6559 |
6739 |
+ |
hAT-7_PTr |
DNA/hAT-Ac |
| scaffold5548 |
8491 |
8532 |
+ |
A-rich |
Low_complexity |
| scaffold5548 |
8692 |
8994 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold5548 |
9887 |
9931 |
+ |
A-rich |
Low_complexity |
| scaffold5548 |
10009 |
10050 |
+ |
(ATCCGAA)n |
Simple_repeat |
| scaffold5548 |
10082 |
10181 |
- |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold5548 |
10207 |
10551 |
+ |
RS63 |
Unspecified |
| scaffold5548 |
11476 |
11509 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold5548 |
11622 |
11676 |
- |
HAT-14_Mad |
DNA/hAT-Tip100 |
| scaffold5548 |
12002 |
12028 |
+ |
(A)n |
Simple_repeat |
| scaffold5548 |
12256 |
12318 |
- |
HAT-N15_Mad |
DNA/hAT-Tip100 |
| scaffold5548 |
12319 |
13254 |
- |
RS266 |
Unspecified |
| scaffold5548 |
14248 |
14373 |
- |
PL247 |
Unspecified |
| scaffold5548 |
14882 |
15114 |
+ |
RS265 |
Unspecified |
| scaffold5548 |
16063 |
16277 |
+ |
PL232 |
Unspecified |
| scaffold5548 |
16366 |
17105 |
+ |
PL439 |
Unspecified |
| scaffold5548 |
17119 |
17171 |
+ |
(TTTTATT)n |
Simple_repeat |
| scaffold5548 |
17777 |
17909 |
- |
RS16588 |
Unspecified |
| scaffold5548 |
20514 |
20532 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
23123 |
23177 |
+ |
(GTGCACT)n |
Simple_repeat |
| scaffold5548 |
23973 |
23998 |
+ |
(A)n |
Simple_repeat |
| scaffold5548 |
24034 |
24052 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
24354 |
24393 |
+ |
(TCAATT)n |
Simple_repeat |
| scaffold5548 |
24479 |
24526 |
+ |
G-rich |
Low_complexity |
| scaffold5548 |
24763 |
24785 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5548 |
24924 |
25279 |
+ |
RS4109 |
Unspecified |
| scaffold5548 |
25162 |
25330 |
- |
RS1441 |
Unspecified |
| scaffold5548 |
26044 |
26080 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold5548 |
27661 |
27849 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold5548 |
28311 |
28481 |
- |
RS17860 |
Unspecified |
| scaffold5548 |
28949 |
28969 |
+ |
(TATT)n |
Simple_repeat |
| scaffold5548 |
29671 |
29904 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold5548 |
29785 |
29837 |
+ |
MuDR-4_Mad |
DNA/MULE-MuDR |
| scaffold5548 |
30548 |
30643 |
+ |
A-rich |
Low_complexity |
| scaffold5548 |
31033 |
31094 |
+ |
G-rich |
Low_complexity |
| scaffold5548 |
31766 |
31788 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold5548 |
34015 |
34036 |
+ |
(CTTT)n |
Simple_repeat |
| scaffold5548 |
35571 |
35613 |
+ |
(TCACTAA)n |
Simple_repeat |
| scaffold5548 |
35781 |
35853 |
+ |
(ATTTCTT)n |
Simple_repeat |
| scaffold5548 |
35894 |
35946 |
+ |
GA-rich |
Low_complexity |
| scaffold5548 |
36020 |
36077 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold5548 |
37538 |
37560 |
+ |
(TA)n |
Simple_repeat |
| scaffold5548 |
44086 |
44151 |
+ |
(GAG)n |
Simple_repeat |
| scaffold5548 |
44365 |
44552 |
+ |
PL819 |
Unspecified |
| scaffold5548 |
44531 |
44713 |
- |
RS12788 |
Unspecified |
| scaffold5548 |
45107 |
45149 |
+ |
A-rich |
Low_complexity |
| scaffold5548 |
45697 |
45830 |
+ |
PL9 |
Unspecified |
| scaffold5548 |
45829 |
46128 |
- |
PL9 |
Unspecified |
| scaffold5548 |
45833 |
46261 |
+ |
PL9 |
Unspecified |
| scaffold5548 |
46327 |
46392 |
+ |
(CCCTC)n |
Simple_repeat |
| scaffold5548 |
46668 |
46843 |
- |
RS13348 |
Unspecified |
| scaffold5548 |
46678 |
46868 |
+ |
RS757 |
Unspecified |
| scaffold5548 |
46933 |
46949 |
+ |
(A)n |
Simple_repeat |
| scaffold5548 |
46972 |
47441 |
+ |
RS35 |
Unspecified |
| scaffold5548 |
48652 |
48719 |
- |
RS347 |
Unspecified |
| scaffold5548 |
48709 |
48800 |
- |
RS347 |
Unspecified |
| scaffold5548 |
48895 |
48950 |
- |
LTR-2_MX-LTR |
LTR |
| scaffold5548 |
49172 |
49369 |
+ |
RS152 |
Unspecified |
| scaffold5548 |
49367 |
49545 |
- |
RS503 |
Unspecified |
| scaffold5548 |
49502 |
49551 |
+ |
RS152 |
Unspecified |
| scaffold5548 |
49830 |
49930 |
- |
RS4475 |
Unspecified |
| scaffold5548 |
50255 |
50284 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
51397 |
51420 |
+ |
(A)n |
Simple_repeat |
| scaffold5548 |
51785 |
51863 |
- |
RS2958 |
Unspecified |
| scaffold5548 |
52125 |
52184 |
+ |
(TAATTAA)n |
Simple_repeat |
| scaffold5548 |
52274 |
52391 |
+ |
PL423 |
Unspecified |
| scaffold5548 |
52292 |
52468 |
+ |
PL787 |
Unspecified |
| scaffold5548 |
58170 |
58203 |
+ |
GA-rich |
Low_complexity |
| scaffold5548 |
60885 |
61069 |
+ |
RS178 |
Unspecified |
| scaffold5548 |
61200 |
61345 |
+ |
RS2064 |
Unspecified |
| scaffold5548 |
61345 |
61574 |
- |
RS10311 |
Unspecified |
| scaffold5548 |
61575 |
61634 |
- |
RS178 |
Unspecified |
| scaffold5548 |
62117 |
62135 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
62300 |
62328 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
63028 |
63181 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5548 |
63347 |
63511 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5548 |
63715 |
63752 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
63834 |
63894 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5548 |
64339 |
64399 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5548 |
64924 |
64977 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5548 |
69397 |
69431 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold5548 |
69559 |
69581 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold5548 |
69745 |
69780 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
69998 |
70387 |
- |
PL133 |
Unspecified |
| scaffold5548 |
70381 |
70597 |
+ |
PL774 |
Unspecified |
| scaffold5548 |
71078 |
71118 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
71181 |
71198 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
71994 |
72068 |
+ |
RS10693 |
Unspecified |
| scaffold5548 |
72184 |
72450 |
+ |
RS13855 |
Unspecified |
| scaffold5548 |
72349 |
72517 |
+ |
RS2948 |
Unspecified |
| scaffold5548 |
72379 |
72524 |
+ |
RS13855 |
Unspecified |
| scaffold5548 |
73363 |
73408 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold5548 |
73434 |
73761 |
+ |
PL483 |
Unspecified |
| scaffold5548 |
73787 |
74574 |
- |
RS140 |
Unspecified |
| scaffold5548 |
74594 |
75102 |
+ |
RS819 |
Unspecified |
| scaffold5548 |
75266 |
75342 |
+ |
(TTTCA)n |
Simple_repeat |
| scaffold5548 |
75771 |
75919 |
+ |
RS11941 |
Unspecified |
| scaffold5548 |
75999 |
76112 |
+ |
RS15933 |
Unspecified |
| scaffold5548 |
76525 |
76630 |
+ |
RS15420 |
Unspecified |
| scaffold5548 |
76658 |
76771 |
+ |
RS15933 |
Unspecified |
| scaffold5548 |
77184 |
77289 |
+ |
RS15420 |
Unspecified |
| scaffold5548 |
77719 |
77743 |
+ |
(T)n |
Simple_repeat |
| scaffold5548 |
78285 |
78499 |
- |
RS5370 |
Unspecified |
| scaffold5548 |
79939 |
80000 |
+ |
(CCTGCA)n |
Simple_repeat |
| scaffold5548 |
80384 |
81501 |
- |
L1-1_GM |
LINE/L1 |
| scaffold5548 |
81522 |
81930 |
- |
RS7678 |
Unspecified |
| scaffold5548 |
82132 |
82517 |
- |
RS446 |
Unspecified |
| scaffold5548 |
82772 |
82853 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5548 |
83041 |
83143 |
- |
RS9025 |
Unspecified |
| scaffold5548 |
83137 |
83251 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold5548 |
83279 |
83406 |
- |
RS10047 |
Unspecified |
| scaffold5548 |
86315 |
86353 |
+ |
GA-rich |
Low_complexity |
| scaffold5548 |
86632 |
87040 |
- |
PL580 |
Unspecified |
| scaffold5548 |
86680 |
87027 |
- |
RS5402 |
Unspecified |