scaffold8719 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold8719 |
99 |
120 |
+ |
(C)n |
Simple_repeat |
| scaffold8719 |
264 |
984 |
- |
RS1560 |
Unspecified |
| scaffold8719 |
1737 |
2849 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold8719 |
1848 |
2708 |
+ |
Copia-71_BRa-I |
LTR/Copia |
| scaffold8719 |
3042 |
4053 |
+ |
Copia-71_BRa-I |
LTR/Copia |
| scaffold8719 |
4144 |
4378 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold8719 |
4462 |
4724 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold8719 |
4851 |
4907 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold8719 |
6455 |
6516 |
+ |
GA-rich |
Low_complexity |
| scaffold8719 |
6675 |
6713 |
+ |
(CCTTC)n |
Simple_repeat |
| scaffold8719 |
7234 |
7695 |
+ |
ATCopia6I |
LTR/Copia |
| scaffold8719 |
7922 |
8323 |
+ |
RS259 |
Unspecified |
| scaffold8719 |
10001 |
10071 |
- |
RS1024 |
Unspecified |
| scaffold8719 |
10113 |
10151 |
+ |
(GTC)n |
Simple_repeat |
| scaffold8719 |
11164 |
11248 |
+ |
RS384 |
Unspecified |
| scaffold8719 |
11882 |
11918 |
+ |
(TTGGAT)n |
Simple_repeat |
| scaffold8719 |
12289 |
12315 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
12980 |
13302 |
- |
RS1024 |
Unspecified |
| scaffold8719 |
13567 |
13614 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
13648 |
15728 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold8719 |
13726 |
15728 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold8719 |
15722 |
18039 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold8719 |
18603 |
19291 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold8719 |
19369 |
19517 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold8719 |
19612 |
19844 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold8719 |
19690 |
19844 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold8719 |
20181 |
20238 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold8719 |
20267 |
20448 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold8719 |
20643 |
21223 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold8719 |
21625 |
21660 |
+ |
(AAACTAAC)n |
Simple_repeat |
| scaffold8719 |
21673 |
21828 |
- |
RS11629 |
Unspecified |
| scaffold8719 |
25615 |
26307 |
+ |
RS813 |
Unspecified |
| scaffold8719 |
26306 |
26755 |
+ |
RS21 |
Unspecified |
| scaffold8719 |
26690 |
29276 |
+ |
RS813 |
Unspecified |
| scaffold8719 |
29358 |
29398 |
+ |
(ATACAC)n |
Simple_repeat |
| scaffold8719 |
29419 |
29484 |
+ |
(TCAGCA)n |
Simple_repeat |
| scaffold8719 |
29502 |
29942 |
+ |
RS564 |
Unspecified |
| scaffold8719 |
31641 |
31792 |
+ |
RS254 |
Unspecified |
| scaffold8719 |
31791 |
33080 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold8719 |
31792 |
32549 |
- |
Copia-79_ST-I |
LTR/Copia |
| scaffold8719 |
32611 |
32958 |
- |
Copia-79_ST-I |
LTR/Copia |
| scaffold8719 |
33196 |
34044 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold8719 |
33455 |
34017 |
- |
Copia-79_ST-I |
LTR/Copia |
| scaffold8719 |
34377 |
34400 |
+ |
(TTGAA)n |
Simple_repeat |
| scaffold8719 |
34980 |
35028 |
+ |
(GCTCGG)n |
Simple_repeat |
| scaffold8719 |
36660 |
36681 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
37448 |
37495 |
+ |
(CAAGCT)n |
Simple_repeat |
| scaffold8719 |
41827 |
41854 |
+ |
(AATG)n |
Simple_repeat |
| scaffold8719 |
41894 |
41943 |
+ |
(GGTTGT)n |
Simple_repeat |
| scaffold8719 |
42104 |
42127 |
+ |
(TC)n |
Simple_repeat |
| scaffold8719 |
42249 |
42287 |
+ |
GA-rich |
Low_complexity |
| scaffold8719 |
42324 |
42352 |
+ |
(CAACACA)n |
Simple_repeat |
| scaffold8719 |
43538 |
43561 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
46213 |
46243 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
46300 |
46318 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
46480 |
46526 |
+ |
(TTTGA)n |
Simple_repeat |
| scaffold8719 |
47868 |
48123 |
- |
RS1 |
Unspecified |
| scaffold8719 |
48268 |
48313 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
48407 |
48429 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
48786 |
48816 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
49179 |
49229 |
- |
RS10 |
Unspecified |
| scaffold8719 |
49186 |
49296 |
+ |
RS10 |
Unspecified |
| scaffold8719 |
50272 |
50281 |
+ |
(GGTGGC)n |
Simple_repeat |
| scaffold8719 |
50282 |
50368 |
+ |
(GTG)n |
Simple_repeat |
| scaffold8719 |
50372 |
50394 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
50394 |
50434 |
+ |
(TAA)n |
Simple_repeat |
| scaffold8719 |
50421 |
50442 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
50481 |
50545 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold8719 |
50547 |
50584 |
+ |
(GTG)n |
Simple_repeat |
| scaffold8719 |
50587 |
50637 |
+ |
GA-rich |
Low_complexity |
| scaffold8719 |
50693 |
50747 |
+ |
RS15397 |
Unspecified |
| scaffold8719 |
50736 |
50887 |
- |
RS15131 |
Unspecified |
| scaffold8719 |
50933 |
51072 |
+ |
RS3041 |
Unspecified |
| scaffold8719 |
51463 |
51493 |
+ |
(AAAGG)n |
Simple_repeat |
| scaffold8719 |
51701 |
51720 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
53163 |
53180 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
54499 |
54579 |
+ |
(CACCAC)n |
Simple_repeat |
| scaffold8719 |
54604 |
54679 |
+ |
(CTC)n |
Simple_repeat |
| scaffold8719 |
54706 |
54743 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
54793 |
54826 |
+ |
(TTGGAA)n |
Simple_repeat |
| scaffold8719 |
55054 |
55094 |
+ |
RS14462 |
Unspecified |
| scaffold8719 |
55673 |
55702 |
+ |
(GGGA)n |
Simple_repeat |
| scaffold8719 |
59555 |
59580 |
+ |
(ATCAA)n |
Simple_repeat |
| scaffold8719 |
60475 |
60503 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
62390 |
62420 |
+ |
(TCTTTC)n |
Simple_repeat |
| scaffold8719 |
63299 |
63389 |
- |
RS758 |
Unspecified |
| scaffold8719 |
63398 |
63508 |
- |
RS18 |
Unspecified |
| scaffold8719 |
63654 |
63705 |
+ |
(ACC)n |
Simple_repeat |
| scaffold8719 |
63654 |
63955 |
+ |
(ACC)n |
Simple_repeat |
| scaffold8719 |
63687 |
63955 |
- |
RS13552 |
Unspecified |
| scaffold8719 |
63973 |
64003 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
63973 |
64426 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
64000 |
64426 |
+ |
PL584 |
Unspecified |
| scaffold8719 |
67989 |
68074 |
- |
RS576 |
Unspecified |
| scaffold8719 |
68276 |
68331 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold8719 |
68666 |
68690 |
+ |
(TA)n |
Simple_repeat |
| scaffold8719 |
69151 |
69210 |
+ |
(TGTGTTT)n |
Simple_repeat |
| scaffold8719 |
70573 |
70650 |
+ |
(TCTATTT)n |
Simple_repeat |
| scaffold8719 |
71045 |
71070 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
71953 |
71992 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold8719 |
72056 |
72084 |
+ |
(TCC)n |
Simple_repeat |
| scaffold8719 |
72163 |
72392 |
+ |
RS18 |
Unspecified |
| scaffold8719 |
72460 |
72477 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
72956 |
73408 |
+ |
PL2 |
Unspecified |
| scaffold8719 |
73459 |
73583 |
+ |
RS1129 |
Unspecified |
| scaffold8719 |
73944 |
73988 |
+ |
(TGC)n |
Simple_repeat |
| scaffold8719 |
74016 |
74049 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold8719 |
74201 |
74242 |
+ |
RS18407 |
Unspecified |
| scaffold8719 |
74210 |
74575 |
- |
RS8 |
Unspecified |
| scaffold8719 |
74610 |
74639 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
75176 |
75426 |
- |
RS777 |
Unspecified |
| scaffold8719 |
75957 |
76022 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8719 |
76844 |
76961 |
+ |
RS972 |
Unspecified |
| scaffold8719 |
77007 |
77059 |
+ |
RS4092 |
Unspecified |
| scaffold8719 |
77084 |
77188 |
+ |
RS342 |
Unspecified |
| scaffold8719 |
77723 |
77751 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
78230 |
78257 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
79040 |
79110 |
+ |
(AATT)n |
Simple_repeat |
| scaffold8719 |
79708 |
79727 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
80381 |
80425 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold8719 |
80421 |
80473 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
81266 |
81344 |
+ |
(AT)n |
Simple_repeat |
| scaffold8719 |
81512 |
81545 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8719 |
81825 |
81862 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold8719 |
82380 |
84533 |
+ |
Copia-2_GM-I |
LTR/Copia |
| scaffold8719 |
84986 |
85030 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold8719 |
85026 |
85078 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
85872 |
85950 |
+ |
(AT)n |
Simple_repeat |
| scaffold8719 |
86118 |
86151 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8719 |
86431 |
86468 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold8719 |
88785 |
88816 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
89193 |
89481 |
+ |
PL503 |
Unspecified |
| scaffold8719 |
89745 |
90014 |
+ |
PL301 |
Unspecified |
| scaffold8719 |
90869 |
91851 |
- |
RS218 |
Unspecified |
| scaffold8719 |
91657 |
91964 |
- |
RS1026 |
Unspecified |
| scaffold8719 |
92114 |
92180 |
+ |
(TTGACC)n |
Simple_repeat |
| scaffold8719 |
94268 |
94284 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
97650 |
97704 |
+ |
(CGAGCC)n |
Simple_repeat |
| scaffold8719 |
100432 |
100480 |
+ |
(TTCCCT)n |
Simple_repeat |
| scaffold8719 |
101227 |
101293 |
+ |
(GTGTGC)n |
Simple_repeat |
| scaffold8719 |
103052 |
103193 |
+ |
RS1258 |
Unspecified |
| scaffold8719 |
104684 |
104718 |
+ |
(ACAAA)n |
Simple_repeat |
| scaffold8719 |
105374 |
105703 |
- |
PL9 |
Unspecified |
| scaffold8719 |
105953 |
106071 |
- |
RS12656 |
Unspecified |
| scaffold8719 |
106916 |
106960 |
+ |
(CCACCG)n |
Simple_repeat |
| scaffold8719 |
107015 |
107063 |
+ |
(TCA)n |
Simple_repeat |
| scaffold8719 |
107108 |
107132 |
+ |
(TCG)n |
Simple_repeat |
| scaffold8719 |
107276 |
107302 |
+ |
(TCG)n |
Simple_repeat |
| scaffold8719 |
107667 |
107687 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
108010 |
108377 |
+ |
RS614 |
Unspecified |
| scaffold8719 |
112157 |
112242 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold8719 |
112509 |
112566 |
+ |
(CAA)n |
Simple_repeat |
| scaffold8719 |
113314 |
113361 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
115215 |
116606 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold8719 |
115368 |
116248 |
- |
L1-5_Mad |
LINE/L1 |
| scaffold8719 |
116996 |
117553 |
+ |
RS562 |
Unspecified |
| scaffold8719 |
117598 |
117692 |
+ |
(TAAGAA)n |
Simple_repeat |
| scaffold8719 |
118659 |
118903 |
- |
RS1267 |
Unspecified |
| scaffold8719 |
119187 |
119393 |
- |
RS329 |
Unspecified |
| scaffold8719 |
119339 |
119457 |
- |
RS25 |
Unspecified |
| scaffold8719 |
120283 |
120440 |
- |
RS5 |
Unspecified |
| scaffold8719 |
121080 |
121103 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8719 |
121290 |
121311 |
+ |
(GTA)n |
Simple_repeat |
| scaffold8719 |
121546 |
121573 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
121607 |
121641 |
+ |
(AGTGAA)n |
Simple_repeat |
| scaffold8719 |
121779 |
121914 |
- |
PL903 |
Unspecified |
| scaffold8719 |
121910 |
121949 |
- |
PL903 |
Unspecified |
| scaffold8719 |
121922 |
121975 |
+ |
PL743 |
Unspecified |
| scaffold8719 |
122344 |
122366 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
122840 |
122876 |
+ |
(A)n |
Simple_repeat |
| scaffold8719 |
122940 |
122984 |
+ |
(GATGTGA)n |
Simple_repeat |
| scaffold8719 |
123263 |
123330 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold8719 |
123489 |
123567 |
+ |
(TCAGT)n |
Simple_repeat |
| scaffold8719 |
123671 |
124032 |
- |
RS221 |
Unspecified |
| scaffold8719 |
124362 |
124410 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold8719 |
124604 |
124655 |
+ |
(T)n |
Simple_repeat |
| scaffold8719 |
125112 |
125143 |
+ |
A-rich |
Low_complexity |
| scaffold8719 |
125420 |
125451 |
+ |
(T)n |
Simple_repeat |