scaffold8727 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold8727 |
3 |
566 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold8727 |
6 |
565 |
+ |
EnSpm-2_STu |
DNA/CMC-EnSpm |
| scaffold8727 |
556 |
2211 |
- |
RS528 |
Unspecified |
| scaffold8727 |
2347 |
2672 |
+ |
RS472 |
Unspecified |
| scaffold8727 |
3501 |
3525 |
+ |
(A)n |
Simple_repeat |
| scaffold8727 |
4059 |
4089 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
4276 |
4315 |
+ |
(TCTTCAA)n |
Simple_repeat |
| scaffold8727 |
4316 |
4325 |
+ |
(TTCA)n |
Simple_repeat |
| scaffold8727 |
4524 |
4591 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold8727 |
8446 |
8478 |
+ |
(TACTAG)n |
Simple_repeat |
| scaffold8727 |
9662 |
9686 |
+ |
(GGC)n |
Simple_repeat |
| scaffold8727 |
9863 |
9886 |
+ |
(TGG)n |
Simple_repeat |
| scaffold8727 |
10024 |
10107 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold8727 |
10024 |
10078 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold8727 |
10056 |
10107 |
+ |
RS17722 |
Unspecified |
| scaffold8727 |
15782 |
15883 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold8727 |
16040 |
16070 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold8727 |
16074 |
16228 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold8727 |
16240 |
16510 |
+ |
RS1995 |
Unspecified |
| scaffold8727 |
16332 |
16577 |
+ |
RS3707 |
Unspecified |
| scaffold8727 |
16618 |
16706 |
- |
RS1068 |
Unspecified |
| scaffold8727 |
16707 |
17149 |
+ |
RS7491 |
Unspecified |
| scaffold8727 |
17113 |
17220 |
+ |
RS739 |
Unspecified |
| scaffold8727 |
17146 |
17242 |
+ |
RS18358 |
Unspecified |
| scaffold8727 |
17254 |
17309 |
+ |
(GATTTAT)n |
Simple_repeat |
| scaffold8727 |
17939 |
18940 |
- |
PL891 |
Unspecified |
| scaffold8727 |
19085 |
19121 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold8727 |
19516 |
19642 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold8727 |
20307 |
20542 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold8727 |
20709 |
20946 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold8727 |
21721 |
21760 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
23296 |
23540 |
+ |
RS474 |
Unspecified |
| scaffold8727 |
24116 |
24212 |
+ |
(A)n |
Simple_repeat |
| scaffold8727 |
24522 |
24724 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
24690 |
24730 |
+ |
(AGGTTTA)n |
Simple_repeat |
| scaffold8727 |
25076 |
25098 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
25102 |
25435 |
+ |
RS607 |
Unspecified |
| scaffold8727 |
25624 |
25746 |
+ |
RS1657 |
Unspecified |
| scaffold8727 |
25645 |
26344 |
+ |
RS1657 |
Unspecified |
| scaffold8727 |
26335 |
26475 |
+ |
RS5857 |
Unspecified |
| scaffold8727 |
26412 |
26486 |
- |
RS2356 |
Unspecified |
| scaffold8727 |
26492 |
26593 |
+ |
RS5857 |
Unspecified |
| scaffold8727 |
27145 |
27165 |
+ |
(A)n |
Simple_repeat |
| scaffold8727 |
27451 |
27537 |
+ |
RS8944 |
Unspecified |
| scaffold8727 |
27812 |
27926 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
27813 |
27886 |
+ |
GA-rich |
Low_complexity |
| scaffold8727 |
28013 |
28037 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
28053 |
28140 |
- |
RS803 |
Unspecified |
| scaffold8727 |
28281 |
28697 |
- |
PL565 |
Unspecified |
| scaffold8727 |
29381 |
29462 |
+ |
(TAT)n |
Simple_repeat |
| scaffold8727 |
30964 |
31062 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold8727 |
31267 |
31345 |
+ |
(TAT)n |
Simple_repeat |
| scaffold8727 |
31381 |
31569 |
+ |
(AAT)n |
Simple_repeat |
| scaffold8727 |
31586 |
31712 |
+ |
(GTTCA)n |
Simple_repeat |
| scaffold8727 |
32000 |
32123 |
- |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold8727 |
33185 |
33259 |
+ |
(AATAATT)n |
Simple_repeat |
| scaffold8727 |
33515 |
33567 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
34663 |
34716 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
34760 |
34795 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
34849 |
34878 |
+ |
(CAT)n |
Simple_repeat |
| scaffold8727 |
34933 |
35017 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
40381 |
40567 |
+ |
RS16861 |
Unspecified |
| scaffold8727 |
41214 |
41245 |
+ |
(GAA)n |
Simple_repeat |
| scaffold8727 |
41501 |
41687 |
+ |
RS16861 |
Unspecified |
| scaffold8727 |
42324 |
42356 |
+ |
(AGA)n |
Simple_repeat |
| scaffold8727 |
42461 |
42489 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
42553 |
42672 |
- |
PL662 |
Unspecified |
| scaffold8727 |
42854 |
42872 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
42997 |
43036 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
43592 |
43748 |
- |
PL662 |
Unspecified |
| scaffold8727 |
43789 |
43805 |
+ |
(A)n |
Simple_repeat |
| scaffold8727 |
43952 |
43988 |
+ |
(TTTAATT)n |
Simple_repeat |
| scaffold8727 |
44896 |
44924 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8727 |
45366 |
45595 |
+ |
RS919 |
Unspecified |
| scaffold8727 |
45594 |
45764 |
- |
PL662 |
Unspecified |
| scaffold8727 |
46882 |
46910 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8727 |
47908 |
47956 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold8727 |
48292 |
48487 |
- |
PL616 |
Unspecified |
| scaffold8727 |
49345 |
49455 |
+ |
RS10032 |
Unspecified |
| scaffold8727 |
49579 |
49685 |
+ |
RS5281 |
Unspecified |
| scaffold8727 |
51752 |
52072 |
+ |
RS10782 |
Unspecified |
| scaffold8727 |
52779 |
52800 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
54113 |
54142 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
59131 |
59152 |
+ |
(A)n |
Simple_repeat |
| scaffold8727 |
59281 |
59464 |
+ |
Copia-32-I_VV |
LTR/Copia |
| scaffold8727 |
59681 |
59705 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
60372 |
60618 |
- |
RS16888 |
Unspecified |
| scaffold8727 |
61047 |
61145 |
- |
RS1412 |
Unspecified |
| scaffold8727 |
61269 |
61341 |
+ |
GA-rich |
Low_complexity |
| scaffold8727 |
61797 |
61856 |
+ |
GA-rich |
Low_complexity |
| scaffold8727 |
62411 |
62453 |
+ |
GA-rich |
Low_complexity |
| scaffold8727 |
63374 |
63424 |
+ |
(TCTCTT)n |
Simple_repeat |
| scaffold8727 |
63684 |
63749 |
- |
RS187 |
Unspecified |
| scaffold8727 |
63895 |
63948 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
64198 |
64230 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
64840 |
65221 |
+ |
RS18408 |
Unspecified |
| scaffold8727 |
65361 |
65470 |
+ |
RS17936 |
Unspecified |
| scaffold8727 |
65571 |
65681 |
+ |
RS17982 |
Unspecified |
| scaffold8727 |
66405 |
67043 |
+ |
RS15881 |
Unspecified |
| scaffold8727 |
67303 |
67502 |
+ |
RS16567 |
Unspecified |
| scaffold8727 |
67589 |
67694 |
+ |
RS16278 |
Unspecified |
| scaffold8727 |
67893 |
67918 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
68158 |
68337 |
+ |
RS774 |
Unspecified |
| scaffold8727 |
68620 |
69001 |
+ |
RS18408 |
Unspecified |
| scaffold8727 |
69141 |
69250 |
+ |
RS17936 |
Unspecified |
| scaffold8727 |
69350 |
69460 |
+ |
RS17982 |
Unspecified |
| scaffold8727 |
70186 |
70824 |
+ |
RS15881 |
Unspecified |
| scaffold8727 |
71084 |
71283 |
+ |
RS16567 |
Unspecified |
| scaffold8727 |
71370 |
71475 |
+ |
RS16278 |
Unspecified |
| scaffold8727 |
71674 |
71699 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
74111 |
74427 |
+ |
RS2590 |
Unspecified |
| scaffold8727 |
74240 |
74588 |
+ |
RS2886 |
Unspecified |
| scaffold8727 |
74735 |
74761 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
74808 |
74940 |
+ |
RS1599 |
Unspecified |
| scaffold8727 |
75761 |
75777 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
76251 |
76369 |
+ |
RS14232 |
Unspecified |
| scaffold8727 |
77940 |
77967 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
78442 |
78560 |
+ |
RS14232 |
Unspecified |
| scaffold8727 |
79534 |
79653 |
+ |
RS11261 |
Unspecified |
| scaffold8727 |
79876 |
80179 |
+ |
RS13833 |
Unspecified |
| scaffold8727 |
80203 |
80285 |
+ |
(TTATTTC)n |
Simple_repeat |
| scaffold8727 |
80334 |
80365 |
+ |
(TTG)n |
Simple_repeat |
| scaffold8727 |
80930 |
81049 |
+ |
RS11261 |
Unspecified |
| scaffold8727 |
81272 |
81575 |
+ |
RS13833 |
Unspecified |
| scaffold8727 |
81592 |
81675 |
+ |
(TTTTTTA)n |
Simple_repeat |
| scaffold8727 |
81727 |
81758 |
+ |
(TTG)n |
Simple_repeat |
| scaffold8727 |
82930 |
83275 |
+ |
RS15403 |
Unspecified |
| scaffold8727 |
84140 |
84259 |
+ |
RS11261 |
Unspecified |
| scaffold8727 |
84482 |
84785 |
+ |
RS13833 |
Unspecified |
| scaffold8727 |
84809 |
84891 |
+ |
(TTATTTC)n |
Simple_repeat |
| scaffold8727 |
84940 |
84971 |
+ |
(TTG)n |
Simple_repeat |
| scaffold8727 |
86143 |
86488 |
+ |
RS15403 |
Unspecified |
| scaffold8727 |
90662 |
90685 |
+ |
(ACT)n |
Simple_repeat |
| scaffold8727 |
91344 |
91379 |
+ |
(CAT)n |
Simple_repeat |
| scaffold8727 |
91605 |
91639 |
+ |
(TTCTTC)n |
Simple_repeat |
| scaffold8727 |
91761 |
91804 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
91875 |
91925 |
- |
RS18039 |
Unspecified |
| scaffold8727 |
92039 |
92303 |
- |
RS106 |
Unspecified |
| scaffold8727 |
92671 |
92700 |
+ |
(ATT)n |
Simple_repeat |
| scaffold8727 |
93963 |
94589 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold8727 |
94703 |
94868 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8727 |
94703 |
94754 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8727 |
94729 |
94868 |
- |
RS17927 |
Unspecified |
| scaffold8727 |
95489 |
95537 |
+ |
(ATT)n |
Simple_repeat |
| scaffold8727 |
95535 |
95689 |
+ |
RS1148 |
Unspecified |
| scaffold8727 |
95689 |
95714 |
+ |
(TTA)n |
Simple_repeat |
| scaffold8727 |
96082 |
96120 |
+ |
(TTTATGAT)n |
Simple_repeat |
| scaffold8727 |
96181 |
96238 |
+ |
A-rich |
Low_complexity |
| scaffold8727 |
96579 |
96736 |
- |
RS5630 |
Unspecified |
| scaffold8727 |
97471 |
97515 |
+ |
(GTTT)n |
Simple_repeat |
| scaffold8727 |
97526 |
97745 |
+ |
RS1438 |
Unspecified |
| scaffold8727 |
101640 |
101963 |
- |
RS2618 |
Unspecified |
| scaffold8727 |
101969 |
102029 |
+ |
(AATATA)n |
Simple_repeat |
| scaffold8727 |
102474 |
102508 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold8727 |
102610 |
102639 |
+ |
(ATTAG)n |
Simple_repeat |
| scaffold8727 |
102765 |
102973 |
+ |
RS376 |
Unspecified |
| scaffold8727 |
104298 |
104324 |
+ |
(AGA)n |
Simple_repeat |
| scaffold8727 |
109477 |
109575 |
- |
RS4475 |
Unspecified |
| scaffold8727 |
109583 |
109653 |
+ |
(TT)n |
Simple_repeat |
| scaffold8727 |
111753 |
111769 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
113408 |
113513 |
- |
RS4475 |
Unspecified |
| scaffold8727 |
113666 |
113703 |
+ |
(TA)n |
Simple_repeat |
| scaffold8727 |
116335 |
116414 |
+ |
RS114 |
Unspecified |
| scaffold8727 |
116626 |
116695 |
+ |
(TTTAAGA)n |
Simple_repeat |
| scaffold8727 |
117463 |
117665 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold8727 |
117964 |
118014 |
+ |
(CGC)n |
Simple_repeat |
| scaffold8727 |
118048 |
118135 |
+ |
(CCT)n |
Simple_repeat |
| scaffold8727 |
118747 |
118862 |
+ |
(GTT)n |
Simple_repeat |
| scaffold8727 |
119917 |
119950 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold8727 |
119952 |
120009 |
+ |
(CCGTGTC)n |
Simple_repeat |
| scaffold8727 |
120211 |
120254 |
+ |
(TTTTGA)n |
Simple_repeat |
| scaffold8727 |
127683 |
127919 |
- |
RS128 |
Unspecified |
| scaffold8727 |
128277 |
128426 |
+ |
PL688 |
Unspecified |
| scaffold8727 |
128431 |
128618 |
+ |
RS2543 |
Unspecified |
| scaffold8727 |
128799 |
128930 |
- |
PL688 |
Unspecified |
| scaffold8727 |
128951 |
129304 |
+ |
PL438 |
Unspecified |
| scaffold8727 |
129212 |
129444 |
+ |
RS16124 |
Unspecified |
| scaffold8727 |
129509 |
129797 |
- |
PL689 |
Unspecified |
| scaffold8727 |
130138 |
130186 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold8727 |
131258 |
131288 |
+ |
(TA)n |
Simple_repeat |
| scaffold8727 |
132343 |
132396 |
+ |
(AATATTT)n |
Simple_repeat |
| scaffold8727 |
132705 |
132816 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold8727 |
132705 |
132990 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold8727 |
132761 |
132990 |
- |
PL884 |
Unspecified |
| scaffold8727 |
133191 |
133340 |
- |
RS1943 |
Unspecified |
| scaffold8727 |
133328 |
133394 |
- |
PL884 |
Unspecified |
| scaffold8727 |
133427 |
133702 |
+ |
PL289 |
Unspecified |
| scaffold8727 |
134036 |
134110 |
+ |
(TGTTATC)n |
Simple_repeat |
| scaffold8727 |
135277 |
135453 |
- |
RS12287 |
Unspecified |
| scaffold8727 |
137833 |
137861 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
138062 |
138117 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
140657 |
140694 |
+ |
(GTTTT)n |
Simple_repeat |
| scaffold8727 |
142044 |
142093 |
- |
ATRAN |
DNA? |
| scaffold8727 |
142729 |
142769 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
143880 |
143923 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold8727 |
146318 |
146370 |
+ |
(TCTTTC)n |
Simple_repeat |
| scaffold8727 |
147249 |
147327 |
+ |
(TTGTTG)n |
Simple_repeat |
| scaffold8727 |
147339 |
147532 |
+ |
SINE2-1_TAe |
SINE/tRNA |
| scaffold8727 |
149699 |
149799 |
+ |
RS109 |
Unspecified |
| scaffold8727 |
149795 |
149907 |
- |
RS109 |
Unspecified |
| scaffold8727 |
150502 |
150531 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold8727 |
151765 |
151786 |
+ |
(A)n |
Simple_repeat |
| scaffold8727 |
152430 |
152462 |
+ |
(GGGCC)n |
Simple_repeat |
| scaffold8727 |
152724 |
152750 |
+ |
(CGGGC)n |
Simple_repeat |
| scaffold8727 |
153552 |
153629 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold8727 |
154289 |
154419 |
- |
RS9085 |
Unspecified |
| scaffold8727 |
154599 |
154733 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold8727 |
156679 |
156709 |
+ |
(TGC)n |
Simple_repeat |
| scaffold8727 |
159340 |
159433 |
- |
RS1847 |
Unspecified |
| scaffold8727 |
161079 |
161200 |
+ |
RS3558 |
Unspecified |
| scaffold8727 |
163250 |
163293 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
163746 |
163963 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold8727 |
164117 |
164204 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold8727 |
164492 |
164549 |
+ |
(TTTTATA)n |
Simple_repeat |
| scaffold8727 |
165066 |
165104 |
+ |
(T)n |
Simple_repeat |
| scaffold8727 |
165327 |
165426 |
+ |
PL390 |
Unspecified |
| scaffold8727 |
165525 |
166086 |
+ |
PL390 |
Unspecified |